Basic Information
Locus ID:
Pt_Chr0404196
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
PHD zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 155046188 | 155052717 | + | Pt_Chr0404196 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.27 | 106,764.29 Da | 50.89 | 76.38 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 495 | 535 | 5.58879E-16 | - |
| Pfam | PF16135 | Tify domain binding domain | 267 | 314 | 1.1E-13 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 496 | 537 | 7.5E-8 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 445 | 477 | 4.4E-7 | IPR032308 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 763 | 856 | 6.59E-7 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 584 | 637 | 2.06E-8 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 484 | 540 | 6.38E-16 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 583 | 642 | 1.8E-11 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 481 | 569 | 9.2E-19 | IPR013083 |
| SMART | SM00249 | PHD_3 | 495 | 536 | 1.5E-10 | IPR001965 |
| SMART | SM00249 | PHD_3 | 583 | 639 | 1.6E-5 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 493 | 538 | 10.5313 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 496 | 535 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 124 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 91 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 915 | 934 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 236 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_047090413.1 | uncharacterized protein LOC124702324 [Lolium rigidum] | 0 |
| Q14839 | Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens OX=9606 GN=CHD4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0Q3H1Q5 | PHD-type domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100835479 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology