Basic Information
Locus ID:
Pt_Chr0404085
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 149589095 | 149596972 | - | Pt_Chr0404085 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 109,217.19 Da | 54.09 | 74.71 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 434 | 489 | 2.9E-14 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 587 | 637 | 1.0E-15 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 735 | 793 | 3.77E-9 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 647 | 698 | 5.55E-11 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 898 | 988 | 5.54E-6 | IPR016181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 640 | 729 | 3.9E-13 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 737 | 798 | 1.3E-12 | IPR013083 |
| SMART | SM00249 | PHD_3 | 739 | 796 | 8.9E-6 | IPR001965 |
| SMART | SM00249 | PHD_3 | 653 | 693 | 4.0E-6 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 737 | 798 | 8.5021 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 654 | 692 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 740 | 795 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 384 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 384 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 331 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 160 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 233 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_047046715.1 | uncharacterized protein LOC124651717 [Lolium rigidum] | 0 |
| TrEMBL | A0A8I7BHX6 | PHD-type domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology