Basic Information
Locus ID:
Pt_Chr0404067
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 149142196 | 149144470 | + | Pt_Chr0404067 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 65,184.08 Da | 41.28 | 98.16 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 235 | 276 | 1.15389E-26 | - |
| Pfam | PF04564 | U-box domain | 231 | 301 | 1.3E-23 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 358 | 396 | 6.9E-11 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 440 | 478 | 1.6E-8 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 226 | 306 | 3.28E-31 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 325 | 601 | 2.77E-50 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 327 | 443 | 6.5E-26 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 231 | 304 | 1.1E-31 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 444 | 606 | 1.0E-26 | IPR011989 |
| SMART | SM00185 | arm_5 | 357 | 397 | 1.4E-6 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 234 | 297 | 5.0E-35 | IPR003613 |
| SMART | SM00185 | arm_5 | 521 | 561 | 23.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 398 | 438 | 0.16 | IPR000225 |
| SMART | SM00185 | arm_5 | 439 | 479 | 0.21 | IPR000225 |
| SMART | SM00185 | arm_5 | 480 | 520 | 160.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 230 | 304 | 45.017532 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 368 | 410 | 14.1574 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 573 | 607 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 574 | 607 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_051198153.1 | U-box domain-containing protein 12 [Lolium perenne] | 0 |
| Q5VRH9 | U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB12 PE=1 SV=1 | 0 | |
| TrEMBL | I1H245 | RING-type E3 ubiquitin transferase OS=Brachypodium distachyon OX=15368 GN=100826371 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology