Basic Information
Locus ID:
Pt_Chr0403838
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 141891564 | 141897211 | - | Pt_Chr0403838 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 83,988.44 Da | 42.59 | 86.62 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 376 | 678 | 3.32445E-155 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 57 | 359 | 9.09283E-166 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 381 | 674 | 1.1E-33 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 56 | 359 | 7.06E-37 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 375 | 678 | 1.83E-48 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 55 | 360 | 1.7E-35 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 374 | 679 | 7.1E-48 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 57 | 360 | 27.597849 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 376 | 679 | 32.61607 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55480.1 | SHV3-like 1. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_051203314.1 | glycerophosphodiester phosphodiesterase GDPDL3-like [Lolium perenne] | 0 |
| Q9FJ62 | Glycerophosphodiester phosphodiesterase GDPDL4 OS=Arabidopsis thaliana OX=3702 GN=GDPDL4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0Q3IE91 | glycerophosphodiester phosphodiesterase OS=Brachypodium distachyon OX=15368 GN=100832468 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology