Basic Information
Locus ID:
Pt_Chr0403743
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 138543005 | 138548237 | - | Pt_Chr0403743 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 44,375.61 Da | 51.81 | 63.61 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 73 | 143 | 1.69996E-33 | - |
| CDD | cd12619 | RRM2_PUB1 | 157 | 231 | 3.00949E-50 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 158 | 228 | 5.4E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 73 | 139 | 2.7E-11 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 69 | 237 | 2.87E-42 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 261 | 312 | 1.88E-5 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 239 | 323 | 2.7E-5 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 156 | 238 | 2.8E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 4 | 155 | 4.4E-24 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 72 | 141 | 2.0E-15 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 157 | 230 | 7.8E-22 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 71 | 145 | 15.016313 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 156 | 234 | 16.61952 | IPR000504 |
| Coils | Coil | Coil | 16 | 36 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_047088645.1 | RNA-binding protein 208 [Lolium rigidum] | 0 |
| Q6YZW2 | RNA-binding protein 208 OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-208 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6SCT0 | Oligouridylate-binding protein 1B OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology