Basic Information
Locus ID:
Pt_Chr0403716
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
BTB/POZ domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 137281987 | 137289503 | + | Pt_Chr0403716 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.08 | 32,922.44 Da | 43.60 | 83.16 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 16 | 137 | 3.08915E-8 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 126 | 231 | 7.1E-23 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 28 | 136 | 5.56E-11 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 124 | 233 | 1.54E-28 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 237 | 290 | 3.2E-13 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 117 | 236 | 1.3E-30 | IPR011333 |
| SMART | SM00225 | BTB_4 | 131 | 235 | 3.9E-21 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 17 | 147 | 10.163141 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 131 | 198 | 17.810247 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_047073217.1 | BTB/POZ and MATH domain-containing protein 1-like [Lolium rigidum] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K2D2E1 | BTB domain-containing protein OS=Brachypodium distachyon OX=15368 GN=BRADI_3g40773v3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology