Basic Information
Locus ID:
Pt_Chr0403660
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 134513911 | 134518767 | + | Pt_Chr0403660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.77 | 78,197.08 Da | 48.94 | 68.61 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 98 | 150 | 1.3E-5 | IPR001607 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 265 | 707 | 5.9E-24 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 262 | 709 | 4.51E-44 | IPR038765 |
| SUPERFAMILY | SSF57850 | RING/U-box | 59 | 151 | 2.83E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 51 | 165 | 6.2E-6 | IPR013083 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 522 | 712 | 8.0E-19 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 254 | 507 | 2.2E-19 | - |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 83 | 155 | 11.625689 | IPR001607 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 264 | 710 | 26.999523 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 645 | 663 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 265 | 280 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 516 | 558 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32780.1 | ubiquitin-specific protease 1. | 0 |
| RefSeq | XP_051203052.1 | ubiquitin carboxyl-terminal hydrolase 2-like [Lolium perenne] | 0 |
| Q9FPT5 | Ubiquitin carboxyl-terminal hydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=UBP1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6TIT6 | USP domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology