Basic Information
Locus ID:
Pt_Chr0403619
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 133644005 | 133650301 | - | Pt_Chr0403619 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.57 | 39,955.22 Da | 53.68 | 83.60 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 7.2266E-31 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.2E-18 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 166 | 203 | 3.3E-14 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 335 | 370 | 7.6E-9 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 252 | 307 | 9.2E-20 | IPR015360 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 248 | 314 | 1.57E-19 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 319 | 377 | 4.38E-13 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 152 | 206 | 4.64E-10 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 91 | 1.54E-22 | IPR029071 |
| Gene3D | G3DSA:1.10.8.10 | - | 327 | 374 | 5.1E-20 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 244 | 308 | 1.9E-24 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 1.0E-26 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 158 | 207 | 3.0E-18 | - |
| SMART | SM00727 | CBM | 248 | 293 | 4.4E-7 | IPR006636 |
| SMART | SM00165 | uba_6 | 335 | 372 | 2.9E-7 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 9.6E-21 | IPR000626 |
| SMART | SM00165 | uba_6 | 165 | 205 | 3.0E-5 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 378 | 5.0E-103 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 20.566074 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 166 | 206 | 12.667379 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 332 | 373 | 14.908409 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 346 | 360 | 1.1E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 361 | 376 | 1.1E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 329 | 345 | 1.1E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 278 | 300 | 1.1E-30 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 141 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.3 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_047071531.1 | ubiquitin receptor RAD23d-like [Lolium rigidum] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A0D3GF39 | Ubiquitin receptor RAD23 OS=Oryza barthii OX=65489 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology