Basic Information
Locus ID:
Pt_Chr0403605
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
NAC domain transcription factor superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 133436839 | 133440989 | + | Pt_Chr0403605 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.74 | 48,608.11 Da | 47.69 | 68.93 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02365 | No apical meristem (NAM) protein | 59 | 197 | 2.6E-22 | IPR003441 |
| SUPERFAMILY | SSF101941 | NAC domain | 43 | 216 | 1.44E-37 | IPR036093 |
| Gene3D | G3DSA:2.170.150.80 | NAC domain | 67 | 220 | 1.4E-29 | IPR036093 |
| ProSiteProfiles | PS51005 | NAC domain profile. | 58 | 216 | 30.68729 | IPR003441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 271 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 324 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G25580.1 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein. Encodes suppressor of gamma response 1 (SOG1), a putative transcription factor governing multiple responses to DNA damage. | 0 |
| RefSeq | XP_051203797.1 | SUPPRESSOR OF GAMMA RESPONSE 1-like [Lolium perenne] | 0 |
| Q6NQK2 | SUPPRESSOR OF GAMMA RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=SOG1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8I6Y798 | NAC domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology