Basic Information
Locus ID:
Pt_Chr0403599
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 133280564 | 133282492 | + | Pt_Chr0403599 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 33,805.22 Da | 50.08 | 69.70 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 234 | 276 | 1.75431E-16 | - |
| Pfam | PF13639 | Ring finger domain | 234 | 276 | 6.1E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 228 | 281 | 8.52E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 219 | 288 | 6.1E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 235 | 275 | 2.3E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 235 | 276 | 13.079398 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 41 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_044402564.1 | uncharacterized protein LOC123126266 [Triticum aestivum] | 0 |
| TrEMBL | A0A3B6N307 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH02.1925, CH02.2138 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0535530, gene-QOZ80_6AG0535550 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0344770.1.CDS1 |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_000907, gene-QYE76_009970, gene-QYE76_042560 ... |
| Poaceae | Oryza coarctata | 1 | Oco01G015310 |
| Poaceae | Oryza sativa | 3 | LOC_Os01g35100.1, LOC_Os01g35120.1, LOC_Os01g44240.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G173700 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0403599, Pt_Chr0403600, Pt_Chr0404536, Pt_Chr0404560 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G878300, Tel5E01G877500 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC3AG014990, gene_TRIDC4BG014250 ... |
| Poaceae | Triticum aestivum | 11 | TraesCS3A02G521400.1.cds1, TraesCS3B02G139400.1.cds1 ... |