Basic Information
Locus ID:
Pt_Chr0403530
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 130505816 | 130508372 | + | Pt_Chr0403530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.18 | 52,311.46 Da | 40.93 | 76.14 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 175 | 450 | 7.1983E-42 | - |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 196 | 250 | 1.4E-5 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 327 | 365 | 0.011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 415 | 450 | 0.0014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 276 | 310 | 1.9E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 154 | 451 | 1.46E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 104 | 453 | 4.0E-114 | IPR015943 |
| SMART | SM00320 | WD40_4 | 411 | 450 | 9.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 271 | 310 | 2.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 368 | 408 | 230.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 323 | 365 | 0.0011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 186 | 225 | 4.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 228 | 267 | 1.8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 278 | 319 | 15.019908 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 418 | 451 | 10.838322 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 418 | 451 | 13.048234 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 193 | 234 | 11.109979 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 278 | 312 | 11.550137 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 297 | 311 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 437 | 451 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33260.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.2) | 0 |
| RefSeq | XP_051202889.1 | cell division cycle 20.2, cofactor of APC complex-like [Lolium perenne] | 0 |
| Q9S7I8 | Cell division cycle 20.2, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A835F734 | ANAPC4_WD40 domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_017721 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology