Basic Information
Locus ID:
Pt_Chr0403527
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
IBR domain, a half RING-finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 130325059 | 130333029 | - | Pt_Chr0403527 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.07 | 65,249.96 Da | 52.89 | 59.83 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 153 | 203 | 3.78449E-12 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 222 | 283 | 1.6E-13 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 300 | 347 | 1.5E-9 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 149 | 231 | 5.46E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 222 | 290 | 1.65E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 302 | 350 | 4.71E-17 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 279 | 541 | 9.0E-86 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 147 | 234 | 6.9E-17 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 296 | 357 | 0.048 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 222 | 283 | 1.0E-19 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 153 | 199 | 8.992817 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 149 | 361 | 47.111473 | IPR044066 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 541 | 578 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 544 | 567 | - | - |
| Coils | Coil | Coil | 362 | 389 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_037464192.1 | probable E3 ubiquitin-protein ligase ARI8 [Triticum dicoccoides] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6SG72 | RBR-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology