Basic Information
Locus ID:
Pt_Chr0403526
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Short Name:
CPK24
Description:
EF-hand domain pair
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 130322775 | 130324933 | + | Pt_Chr0403526 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.91 | 62,778.38 Da | 40.96 | 78.34 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 74 | 358 | 1.27373E-127 | - |
| CDD | cd00051 | EFh | 478 | 535 | 2.05603E-16 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 75 | 359 | 2.6E-65 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 409 | 465 | 9.8E-10 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 477 | 534 | 1.1E-10 | IPR002048 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 70 | 370 | 5.53E-81 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 383 | 547 | 3.84E-40 | IPR011992 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 129 | 186 | 1.0E-9 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 69 | 122 | 8.2E-8 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 368 | 538 | 1.2E-47 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 187 | 367 | 1.7E-62 | - |
| SMART | SM00054 | efh_1 | 478 | 506 | 0.91 | IPR002048 |
| SMART | SM00054 | efh_1 | 509 | 537 | 3.7E-5 | IPR002048 |
| SMART | SM00220 | serkin_6 | 75 | 359 | 1.2E-97 | IPR000719 |
| SMART | SM00054 | efh_1 | 442 | 470 | 0.91 | IPR002048 |
| SMART | SM00054 | efh_1 | 406 | 434 | 0.45 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 505 | 540 | 12.951263 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 75 | 359 | 47.438663 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 402 | 437 | 13.843916 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 438 | 473 | 9.548024 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 474 | 501 | 10.105932 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 518 | 530 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 451 | 463 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 81 | 104 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 221 | 233 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 415 | 427 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 108 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 60 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G12480.1 | calmodulin-domain protein kinase 7. calmodulin-domain protein kinase CDPK isoform 7 (CPK7) | 0 |
| RefSeq | XP_047043431.1 | calcium-dependent protein kinase 21-like [Lolium rigidum] | 0 |
| Q6ZIU9 | Calcium-dependent protein kinase 21 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6SIK1 | Calcium-dependent protein kinase 30 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH08.2242, BH08.2372, CH08.2548 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0638190, gene-QOZ80_8BG0667730 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0686030.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_030419, gene-QYE76_061945 |
| Poaceae | Oryza coarctata | 2 | Oco15G013700, Oco16G012880 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g42750.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G210600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403526 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr20G002420, Chr29G001060 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G466300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG034960, gene_TRIDC7BG026070 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G267000.1, TraesCS7B02G165200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb198360_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-17565 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24464 |