Basic Information
Locus ID:
Pt_Chr0403278
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 119757930 | 119765619 | + | Pt_Chr0403278 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.92 | 107,239.73 Da | 56.59 | 64.68 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 460 | 727 | 9.1E-35 | IPR001394 |
| Pfam | PF01753 | MYND finger | 122 | 159 | 9.6E-10 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 118 | 161 | 5.41E-12 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 456 | 750 | 6.48E-74 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 110 | 163 | 1.5E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 453 | 759 | 1.3E-79 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 460 | 773 | 40.332153 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 122 | 159 | 11.594026 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 122 | 159 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 461 | 476 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 353 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 387 | 413 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 946 | 962 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 808 | 850 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 873 | 897 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 880 | 896 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 816 | 850 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 389 | 413 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 925 | 963 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 338 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 767 | 788 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_047060924.1 | ubiquitin carboxyl-terminal hydrolase 19-like [Lolium rigidum] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8R7R3I1 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Triticum urartu OX=4572 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology