Basic Information
Locus ID:
Pt_Chr0403113
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RING-variant domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 105815808 | 105820023 | + | Pt_Chr0403113 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.76 | 32,675.23 Da | 45.48 | 93.53 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 55 | 106 | 1.3197E-20 | - |
| Pfam | PF12906 | RING-variant domain | 55 | 105 | 8.2E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 50 | 110 | 8.24E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 40 | 119 | 6.3E-18 | IPR013083 |
| SMART | SM00744 | ringv_2 | 54 | 106 | 1.4E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 47 | 112 | 21.983213 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11020.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_047075126.1 | uncharacterized protein LOC124684909 [Lolium rigidum] | 0 |
| TrEMBL | I1I6P3 | RING-CH-type domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100823188 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology