Basic Information
Locus ID:
Pt_Chr0403098
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
clip-associated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 104161410 | 104165996 | + | Pt_Chr0403098 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 101,414.92 Da | 43.90 | 69.99 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF10551 | MULE transposase domain | 370 | 463 | 5.8E-25 | IPR018289 |
| Pfam | PF03101 | FAR1 DNA-binding domain | 169 | 248 | 4.8E-11 | IPR004330 |
| SMART | SM00343 | c2hcfinal6 | 845 | 861 | 0.77 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 874 | 890 | 0.14 | IPR001878 |
| ProSiteProfiles | PS50966 | Zinc finger SWIM-type profile. | 654 | 690 | 9.173618 | IPR007527 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38180.1 | FAR1-related sequence 5. | 0 |
| RefSeq | XP_044347541.1 | protein FAR1-RELATED SEQUENCE 11-like isoform X1 [Triticum aestivum] | 0 |
| Q9SZL8 | Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7VCL2 | SWIM-type domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology