Basic Information
Locus ID:
Pt_Chr0402868
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Lectin-domain containing receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 86746676 | 86752505 | - | Pt_Chr0402868 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 74,244.90 Da | 33.56 | 85.62 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 67 | 300 | 3.476E-68 | IPR001220 |
| Pfam | PF00069 | Protein kinase domain | 353 | 630 | 1.0E-42 | IPR000719 |
| Pfam | PF00139 | Legume lectin domain | 68 | 295 | 9.8E-49 | IPR001220 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 342 | 635 | 3.64E-67 | IPR011009 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 66 | 295 | 1.59E-53 | IPR013320 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 447 | 652 | 3.9E-53 | - |
| Gene3D | G3DSA:2.60.120.200 | - | 65 | 299 | 2.3E-58 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 324 | 427 | 1.1E-21 | - |
| SMART | SM00220 | serkin_6 | 352 | 627 | 3.3E-27 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 352 | 643 | 36.244537 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 490 | 502 | - | IPR008271 |
| ProSitePatterns | PS00307 | Legume lectins beta-chain signature. | 189 | 195 | - | IPR019825 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 358 | 384 | - | IPR017441 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55830.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_047042976.1 | probable L-type lectin-domain containing receptor kinase S.7 [Lolium rigidum] | 0 |
| Q9FHG4 | Probable L-type lectin-domain containing receptor kinase S.7 OS=Arabidopsis thaliana OX=3702 GN=LECRKS7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6NJX9 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH04.1995, BH04.2001, BH04.2004, BH04.2007, BH04.2008 |
| Poaceae | Hordeum vulgare | 8 | HORVU.MOREX.r3.2HG0097640.1, HORVU.MOREX.r3.2HG0097720.1 ... |
| Poaceae | Lolium multiflorum | 15 | gene-QYE76_004354, gene-QYE76_004356, gene-QYE76_004362 ... |
| Poaceae | Oryza coarctata | 2 | Oco08G000910, Oco08G000950 |
| Poaceae | Oryza sativa | 16 | LOC_Os04g03370.1, LOC_Os04g03380.1, LOC_Os04g03530.1 ... |
| Poaceae | Paspalum vaginatum | 10 | gene-BS78_K006300, gene-BS78_K006400, gene-BS78_K006500 ... |
| Poaceae | Puccinellia tenuiflora | 7 | Pt_Chr0300137, Pt_Chr0402868, Pt_Chr0500818, Pt_Chr0500820 ... |
| Poaceae | Thinopyrum elongatum | 7 | Tel1E01G056800, Tel2E01G048600, Tel2E01G048700 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC2AG001630, gene_TRIDC2BG001740 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS2B02G007400.2, TraesCS2B02G008400.1 ... |