Basic Information
Locus ID:
Pt_Chr0402814
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 84177567 | 84184215 | + | Pt_Chr0402814 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.85 | 60,516.98 Da | 49.26 | 86.97 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 405 | 454 | 0.00168963 | - |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 172 | 292 | 1.0E-12 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 307 | 351 | 1.6E-6 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 104 | 165 | 8.2E-7 | IPR020683 |
| SUPERFAMILY | SSF57850 | RING/U-box | 401 | 462 | 6.01E-8 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 104 | 360 | 7.99E-48 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 393 | 473 | 4.3E-7 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 98 | 245 | 8.2E-29 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 246 | 365 | 1.2E-24 | IPR036770 |
| SMART | SM00184 | ring_2 | 405 | 454 | 1.7E-4 | IPR001841 |
| SMART | SM00248 | ANK_2a | 167 | 196 | 0.016 | IPR002110 |
| SMART | SM00248 | ANK_2a | 307 | 336 | 2.5E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 201 | 231 | 310.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 264 | 293 | 3.9E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 134 | 163 | 2.2E-5 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 134 | 165 | 12.116116 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 167 | 199 | 9.24383 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 264 | 292 | 12.540617 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 405 | 455 | 10.350093 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 264 | 296 | 13.06336 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 307 | 339 | 12.12851 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 134 | 166 | 12.9031 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 307 | 338 | 10.922203 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 420 | 429 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 323 | 337 | 3.0E-6 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 265 | 280 | 3.0E-6 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_047073373.1 | probable E3 ubiquitin-protein ligase XBOS35 [Lolium rigidum] | 0 |
| Q7EZ44 | Probable E3 ubiquitin-protein ligase XBOS35 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS35 PE=2 SV=1 | 0 | |
| TrEMBL | I1I2D0 | RING-type domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100831868 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology