Basic Information
Locus ID:
Pt_Chr0402552
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
BTB/POZ domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 75469948 | 75474668 | - | Pt_Chr0402552 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 87,407.73 Da | 38.61 | 81.77 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18280 | BTB_POZ_BPM_plant | 191 | 306 | 2.45468E-42 | - |
| CDD | cd00121 | MATH | 442 | 575 | 1.08308E-19 | IPR002083 |
| CDD | cd00121 | MATH | 35 | 165 | 5.05225E-21 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 604 | 712 | 7.7E-24 | IPR000210 |
| Pfam | PF00651 | BTB/POZ domain | 194 | 306 | 2.0E-26 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 439 | 581 | 4.09E-23 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 590 | 712 | 1.21E-28 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 32 | 171 | 1.64E-27 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 181 | 338 | 6.63E-29 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 440 | 578 | 2.1E-19 | IPR008974 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 33 | 168 | 2.6E-24 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 178 | 302 | 1.0E-34 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 588 | 708 | 2.2E-32 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 712 | 780 | 2.5E-15 | - |
| Gene3D | G3DSA:6.10.250.3030 | - | 303 | 351 | 1.3E-12 | - |
| SMART | SM00225 | BTB_4 | 612 | 713 | 4.8E-21 | IPR000210 |
| SMART | SM00225 | BTB_4 | 202 | 341 | 5.8E-21 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 34 | 164 | 19.061327 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 202 | 271 | 18.285933 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 612 | 675 | 16.279779 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 441 | 574 | 13.870719 | IPR002083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 403 | 430 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.1 | BTB-POZ and MATH domain 2. | 0 |
| RefSeq | XP_044434425.1 | BTB/POZ and MATH domain-containing protein 1-like [Triticum aestivum] | 0 |
| Q9M8J9 | BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6SFW2 | Speckle-type POZ protein-like protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.7HG0703150.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_033572, gene-QYE76_033573 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g03470.1 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0402552 |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G536000, Tel7E01G536100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG043430, gene_TRIDC7BG034710 |
| Poaceae | Triticum aestivum | 5 | TraesCS7A02G311400.1.cds1, TraesCS7B02G211100.1.cds1 ... |