Basic Information
Locus ID:
Pt_Chr0402549
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 75428755 | 75432003 | - | Pt_Chr0402549 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.37 | 88,981.43 Da | 49.87 | 79.27 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 441 | 584 | 3.03716E-17 | IPR002083 |
| CDD | cd18280 | BTB_POZ_BPM_plant | 616 | 731 | 2.38728E-42 | - |
| CDD | cd00121 | MATH | 72 | 214 | 1.68758E-18 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 243 | 361 | 7.3E-20 | IPR000210 |
| Pfam | PF00651 | BTB/POZ domain | 627 | 733 | 3.4E-24 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 67 | 220 | 2.45E-23 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 230 | 360 | 1.57E-24 | IPR011333 |
| SUPERFAMILY | SSF54695 | POZ domain | 605 | 732 | 6.08E-28 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 438 | 593 | 2.13E-22 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 218 | 391 | 4.8E-41 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 68 | 217 | 3.5E-20 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 603 | 729 | 2.2E-33 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 733 | 809 | 2.9E-16 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 439 | 591 | 2.6E-18 | IPR008974 |
| SMART | SM00225 | BTB_4 | 628 | 734 | 6.5E-23 | IPR000210 |
| SMART | SM00225 | BTB_4 | 251 | 362 | 9.6E-24 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 69 | 213 | 12.259841 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 251 | 321 | 16.300461 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 440 | 586 | 15.35375 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 628 | 695 | 16.631374 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.1 | BTB-POZ and MATH domain 2. | 0 |
| RefSeq | XP_051202054.1 | BTB/POZ and MATH domain-containing protein 2-like [Lolium perenne] | 0 |
| Q9M8J9 | BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0LQW4 | BTB domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_033581, gene-QYE76_033582 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g03530.1 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0402549 |