Basic Information
Locus ID:
Pt_Chr0402545
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 75265472 | 75270910 | - | Pt_Chr0402545 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 66,164.46 Da | 49.66 | 88.00 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 269 | 554 | 8.11377E-57 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 474 | 511 | 0.0029 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 307 | 342 | 0.063 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 359 | 384 | 0.25 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 263 | 298 | 8.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 517 | 554 | 1.2E-8 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 258 | 554 | 1.1E-68 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 255 | 518 | 2.5E-62 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 519 | 575 | 4.2E-12 | IPR015943 |
| SMART | SM00668 | ctlh | 94 | 151 | 3.9E-7 | IPR006595 |
| SMART | SM00320 | WD40_4 | 470 | 512 | 0.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 303 | 342 | 3.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 515 | 555 | 7.6E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 386 | 426 | 1.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 259 | 298 | 4.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 345 | 384 | 6.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 428 | 466 | 18.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 522 | 564 | 15.220417 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 266 | 300 | 9.889235 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 310 | 347 | 10.337415 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 266 | 307 | 12.413288 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 310 | 351 | 13.582925 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 61 | 93 | 8.139341 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 522 | 557 | 12.077406 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 94 | 151 | 10.779636 | IPR006595 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 563 | 596 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 562 | 596 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_051184964.1 | WD repeat-containing protein 26 homolog [Lolium perenne] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | I1IH68 | WD repeat-containing protein 26-like OS=Brachypodium distachyon OX=15368 GN=100830778 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology