Basic Information
Locus ID:
Pt_Chr0402533
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 74911968 | 74916861 | + | Pt_Chr0402533 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 71,461.32 Da | 50.79 | 96.20 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 20 | 123 | 7.41559E-44 | - |
| Pfam | PF00651 | BTB/POZ domain | 27 | 117 | 2.6E-7 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 214 | 479 | 7.3E-94 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 16 | 130 | 1.96E-16 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 17 | 148 | 2.1E-11 | IPR011333 |
| SMART | SM00225 | BTB_4 | 28 | 126 | 0.0056 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 214 | 503 | 93.365822 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 28 | 98 | 11.254053 | IPR000210 |
| Coils | Coil | Coil | 546 | 580 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30440.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_051200858.1 | BTB/POZ domain-containing protein At1g30440-like [Lolium perenne] | 0 |
| Q9S9Q9 | BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana OX=3702 GN=At1g30440 PE=1 SV=2 | 0 | |
| TrEMBL | A0A453S053 | BTB/POZ domain-containing protein At1g30440 OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology