Basic Information
Locus ID:
Pt_Chr0402463
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Broad-Complex, Tramtrack and Bric a brac
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 71703470 | 71704994 | - | Pt_Chr0402463 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 40,768.28 Da | 42.34 | 81.33 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 29 | 157 | 3.9697E-17 | IPR002083 |
| CDD | cd18280 | BTB_POZ_BPM_plant | 184 | 296 | 1.3795E-48 | - |
| Pfam | PF00651 | BTB/POZ domain | 187 | 299 | 1.4E-25 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 28 | 163 | 4.74E-24 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 173 | 298 | 5.89E-33 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 299 | 367 | 5.0E-20 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 170 | 295 | 4.5E-38 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 28 | 162 | 9.7E-23 | IPR008974 |
| SMART | SM00225 | BTB_4 | 195 | 300 | 1.0E-26 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 28 | 157 | 16.171974 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 195 | 262 | 18.079113 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.1 | BTB-POZ and MATH domain 2. | 0 |
| RefSeq | XP_047073692.1 | BTB/POZ and MATH domain-containing protein 2-like [Lolium rigidum] | 0 |
| Q9M8J9 | BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6QK20 | Speckle-type POZ protein-like protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology