Basic Information
Locus ID:
Pt_Chr0402430
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 71147472 | 71156503 | + | Pt_Chr0402430 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.89 | 114,452.52 Da | 45.03 | 76.93 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 884 | 989 | 2.96929E-48 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 291 | 646 | 2.23536E-79 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 761 | 797 | 4.0E-5 | IPR018957 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 304 | 723 | 1.7E-67 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 881 | 979 | 1.7E-14 | IPR001650 |
| SUPERFAMILY | SSF57850 | RING/U-box | 749 | 805 | 2.05E-11 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 655 | 1036 | 9.65E-55 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 276 | 646 | 6.25E-45 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 529 | 647 | 2.2E-27 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 661 | 1037 | 2.4E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 262 | 348 | 1.5E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 745 | 812 | 2.9E-12 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 418 | 509 | 2.1E-11 | IPR038718 |
| SMART | SM00184 | ring_2 | 761 | 801 | 8.4E-5 | IPR001841 |
| SMART | SM00490 | helicmild6 | 896 | 979 | 3.4E-17 | IPR001650 |
| SMART | SM00487 | ultradead3 | 287 | 627 | 1.0E-26 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 860 | 1032 | 12.869165 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 761 | 797 | 10.999225 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 441 | 608 | 12.231831 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 776 | 785 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 406 | 420 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 174 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 501 | 539 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 383 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 174 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 434 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 399 | - | - |
Gene Ontology
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_047078604.1 | helicase-like transcription factor CHR28 [Lolium rigidum] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6RJP8 | Helicase ATP-binding domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology