Basic Information
Locus ID:
Pt_Chr0402423
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Diacylglycerol kinase accessory domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 70669412 | 70674400 | - | Pt_Chr0402423 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 63,532.83 Da | 35.62 | 77.69 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00781 | Diacylglycerol kinase catalytic domain | 113 | 238 | 2.6E-25 | IPR001206 |
| Pfam | PF00609 | Diacylglycerol kinase accessory domain | 306 | 481 | 1.3E-37 | IPR000756 |
| SUPERFAMILY | SSF111331 | NAD kinase/diacylglycerol kinase-like | 111 | 485 | 1.5E-36 | IPR016064 |
| Gene3D | G3DSA:3.40.50.10330 | - | 112 | 254 | 1.1E-14 | IPR017438 |
| Gene3D | G3DSA:2.60.200.40 | - | 305 | 487 | 1.6E-9 | - |
| SMART | SM00045 | dagk_c4b_2 | 308 | 481 | 5.4E-20 | IPR000756 |
| SMART | SM00046 | dagk_c4a_7 | 113 | 256 | 2.2E-22 | IPR001206 |
| ProSiteProfiles | PS50146 | DAG-kinase catalytic (DAGKc) domain profile. | 109 | 262 | 24.712543 | IPR001206 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 534 | 546 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 514 | 547 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko00561 (Glycerolipid metabolism)
map00561 (Glycerolipid metabolism)
ko00564 (Glycerophospholipid metabolism)
map00564 (Glycerophospholipid metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko04070 (Phosphatidylinositol signaling system)
map04070 (Phosphatidylinositol signaling system)
ko04072 (Phospholipase D signaling pathway)
map04072 (Phospholipase D signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G20900.2 | diacylglycerol kinase 5. | 0 |
| RefSeq | XP_047078208.1 | diacylglycerol kinase 1-like [Lolium rigidum] | 0 |
| Q7XQT2 | Diacylglycerol kinase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=DGK1 PE=1 SV=2 | 0 | |
| TrEMBL | F2DKU6 | Diacylglycerol kinase OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg20992, jg24191, jg38311 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25839 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah037395 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g206710 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg41765, Sbi_jg48347 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27674 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005406, GOSA_00023286 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl53361, Sgl56305, Sgl58625, Sgl61812, Sgl79129, Sgl81581 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000018167, gene:ENSEOMG00000018531 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9AG0006780 |
| Anacardiaceae | Pistacia vera | 6 | pistato.v30019210, pistato.v30078730, pistato.v30078770 ... |
| Apiaceae | Apium graveolens | 3 | Ag3G00250, Ag4G02029, Ag4G02705 |
| Arecaceae | Cocos nucifera | 3 | COCNU_04G007880, COCNU_12G004010, COCNU_14G006730 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103709886, gene-LOC103717315 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_06.270.V1.1, AsparagusV1_07.3961.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G26080, Ftri2G08660 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G20900.1, AT4G28130.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10001971m.g.v1.0, Thhalv10027135m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g09760.v2.2, Sp3g34170.v2.2, Sp7g26080.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g016660.2N, BniB02g083340.2N, BniB04g024310.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G1159, Ceq02G2535 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl01G1307, Cgl02G2622, Cgl02G2624 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g06510 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g14700, gene.Thate06g10880, gene.Thate07g19370 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9159 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.1950, evm.TU.LG05.1705 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00031451 |
| Plumbaginaceae | Limonium bicolor | 6 | Lb1G03256, Lb2G11413, Lb2G14554, Lb2G14828, Lb5G28385 ... |
| Poaceae | Echinochloa crus-galli | 9 | AH02.3498, AH08.480, AH09.2412, BH02.3455, BH08.502 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_1AG0035910, gene-QOZ80_1BG0085920 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0207660.1, HORVU.MOREX.r3.3HG0293850.1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_032884 |
| Poaceae | Oryza coarctata | 5 | Oco01G022000, Oco02G022540, Oco07G016840, Oco08G016230 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g57420.1, LOC_Os04g54200.1, LOC_Os08g08110.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_03G298700, gene-BS78_06G245000 ... |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0300914, Pt_Chr0301011, Pt_Chr0402423, Pt_Chr0601638 ... |
| Poaceae | Sporobolus alterniflorus | 9 | Chr02G007870, Chr03G017720, Chr05G025650, Chr08G024070 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel2E01G906700, Tel3E01G514200, Tel7E01G662000 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC2AG074600, gene_TRIDC2BG081360 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS2A02G532800.1, TraesCS2B02G562300.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb069350_P001, Zm00001eb151400_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-5942 |
| Poaceae | Zoysia macrostachya | 4 | Zma_g11289, Zma_g20515, Zma_g22035, Zma_g22561 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1321, evm.TU.LG21.1241 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g18570 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1433, evm.TU.Scaffold_5_RagTag.472 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-11021, nbisL1-mrna-11073, nbisL1-mrna-11934 ... |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-18111, nbisL1-mrna-8447, nbisL1-mrna-8735 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-10371, nbisL1-mrna-11044, nbisL1-mrna-21284 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000003l.800, evm.TU.utg000006l.449 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00009377, Maker00013014, Maker00013880 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10354 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15399 |
| Salicaceae | Populus euphratica | 2 | populus_peu00441, populus_peu16930 |
| Solanaceae | Lycium barbarum | 5 | gene-LOC132616843, gene-LOC132630814, gene-LOC132630823 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI005320500, SOLCI005561600, SOLCI007299000 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107005858, gene-LOC107025812, gene-LOC107031892 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.23078_chr05_+, STRG.25851_chr11_+, gene_12271 |
| Tamaricaceae | Tamarix chinensis | 4 | TC01G2376, TC03G1374, TC06G0297, TC08G1572 |
| Zosteraceae | Zostera marina | 2 | Zosma03g24880.v3.1, Zosma04g21910.v3.1 |