Basic Information
Locus ID:
Pt_Chr0402374
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Salt stress response/antifungal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 68288226 | 68300923 | - | Pt_Chr0402374 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 145,227.28 Da | 46.59 | 87.85 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 989 | 1255 | 3.62533E-87 | - |
| CDD | cd14066 | STKc_IRAK | 339 | 606 | 2.93522E-85 | - |
| Pfam | PF01657 | Salt stress response/antifungal | 156 | 234 | 3.0E-9 | IPR002902 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 986 | 1254 | 3.1E-46 | IPR001245 |
| Pfam | PF01657 | Salt stress response/antifungal | 23 | 111 | 1.4E-10 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 659 | 761 | 3.5E-16 | IPR002902 |
| Pfam | PF00069 | Protein kinase domain | 334 | 537 | 3.6E-45 | IPR000719 |
| Pfam | PF01657 | Salt stress response/antifungal | 804 | 879 | 2.0E-8 | IPR002902 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 966 | 1284 | 4.45E-82 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 317 | 626 | 3.78E-80 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1059 | 1268 | 2.4E-60 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 409 | 615 | 3.5E-58 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 945 | 1058 | 7.8E-38 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 652 | 763 | 5.3E-19 | IPR038408 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 296 | 408 | 2.4E-38 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 16 | 114 | 1.4E-11 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 135 | 237 | 5.3E-17 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 775 | 883 | 2.4E-17 | IPR038408 |
| SMART | SM00220 | serkin_6 | 983 | 1260 | 1.5E-34 | IPR000719 |
| SMART | SM00220 | serkin_6 | 333 | 607 | 1.4E-33 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 333 | 611 | 38.520111 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 7 | 115 | 12.858958 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 653 | 765 | 16.61558 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 776 | 883 | 16.199183 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 983 | 1270 | 37.50246 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 129 | 237 | 16.298756 | IPR002902 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 454 | 466 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 339 | 361 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1104 | 1116 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1299 | 1318 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23280.2 | - | 0 |
| RefSeq | XP_037419099.1 | uncharacterized protein LOC119283800 [Triticum dicoccoides] | 0 |
| O65479 | Putative cysteine-rich receptor-like protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=CRK20 PE=2 SV=2 | 0 | |
| TrEMBL | A0A811MDM7 | Cysteine-rich receptor-like protein kinase 25 OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS2676 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology