Basic Information
Locus ID:
Pt_Chr0402317
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 66762283 | 66765674 | - | Pt_Chr0402317 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.54 | 30,174.75 Da | 20.84 | 71.64 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 37 | 96 | 1.2E-6 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 30 | 126 | 1.49E-12 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 30 | 103 | 3.6E-9 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 35 | 104 | 3.0E-4 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 34 | 108 | 10.087302 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 286 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 286 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_047075162.1 | binding partner of ACD11 1-like [Lolium rigidum] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | I1H1W2 | RRM domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100840041 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology