Basic Information
Locus ID:
Pt_Chr0402244
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 64146385 | 64156214 | - | Pt_Chr0402244 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 103,354.32 Da | 36.80 | 87.65 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 102 | 352 | 1.88127E-59 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 275 | 311 | 1.3E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 232 | 270 | 5.8E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 188 | 226 | 0.011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 108 | 140 | 0.26 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 146 | 182 | 7.3E-6 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 374 | 818 | 2.7E-162 | IPR006692 |
| SUPERFAMILY | SSF101898 | NHL repeat | 274 | 547 | 4.97E-19 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 73 | 352 | 5.66E-69 | IPR036322 |
| Gene3D | G3DSA:1.25.40.470 | - | 645 | 853 | 7.9E-83 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 72 | 355 | 1.4E-101 | IPR015943 |
| SMART | SM00320 | WD40_4 | 186 | 226 | 2.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 101 | 140 | 0.11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 143 | 182 | 8.5E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 273 | 312 | 5.2E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 229 | 270 | 7.5E-8 | IPR001680 |
| PIRSF | PIRSF005567 | Beta'-COP | 67 | 919 | 0.0 | IPR016453 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 236 | 279 | 13.215325 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 236 | 273 | 9.915599 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 193 | 227 | 10.047417 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 280 | 321 | 15.72169 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 193 | 235 | 12.17936 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 280 | 311 | 12.604675 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 150 | 182 | 12.74747 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 150 | 182 | 10.601049 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 169 | 183 | 5.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 299 | 313 | 5.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 257 | 271 | 5.3E-6 | IPR020472 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G52360.1 | Coatomer, beta' subunit. | 0 |
| RefSeq | XP_035815286.1 | uncharacterized protein LOC100216577 isoform X2 [Zea mays] | 0 |
| Q5VQ78 | Coatomer subunit beta'-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0143900 PE=2 SV=1 | 0 | |
| TrEMBL | M8ATN9 | Coatomer subunit beta' OS=Triticum urartu OX=4572 GN=TRIUR3_16961 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology