Basic Information
Locus ID:
Pt_Chr0402216
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 63547731 | 63551494 | + | Pt_Chr0402216 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.78 | 25,677.86 Da | 60.24 | 76.22 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 128 | 209 | 1.64181E-32 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 130 | 201 | 1.3E-10 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 122 | 201 | 7.25E-13 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 122 | 214 | 4.3E-19 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 129 | 205 | 1.2E-5 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 128 | 214 | 10.974183 | IPR000504 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76940.2 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_051197674.1 | RNA-binding protein 1-like isoform X2 [Lolium perenne] | 0 |
| A1A6K6 | Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE=2 SV=1 | 0 | |
| TrEMBL | A0A453QN85 | RRM domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology