Basic Information
Locus ID:
Pt_Chr0402069
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 59521595 | 59528744 | - | Pt_Chr0402069 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.87 | 52,694.92 Da | 41.65 | 84.06 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 57 | 176 | 2.33461E-21 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 287 | 394 | 1.3E-22 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 32 | 179 | 5.72E-22 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 288 | 393 | 4.08E-25 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 397 | 465 | 8.7E-18 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 279 | 396 | 1.0E-28 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 31 | 179 | 1.3E-21 | IPR008974 |
| SMART | SM00225 | BTB_4 | 289 | 395 | 1.4E-23 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 27 | 175 | 15.86514 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 289 | 356 | 16.341825 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.2 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_047093402.1 | BTB/POZ and MATH domain-containing protein 3-like [Lolium rigidum] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453JLQ9 | Speckle-type POZ protein-like protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0110870, gene-QOZ80_2BG0164290 ... |
| Poaceae | Hordeum vulgare | 13 | HORVU.MOREX.r3.5HG0427590.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 12 | gene-QYE76_009241, gene-QYE76_009243, gene-QYE76_016733 ... |
| Poaceae | Oryza coarctata | 1 | Oco04G008990 |
| Poaceae | Oryza sativa | 6 | LOC_Os02g20590.1, LOC_Os02g20600.1, LOC_Os02g20620.1 ... |
| Poaceae | Puccinellia tenuiflora | 11 | Pt_Chr0103080, Pt_Chr0103081, Pt_Chr0104126, Pt_Chr0104129 ... |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G001120, Chr09G001130 |
| Poaceae | Thinopyrum elongatum | 16 | Tel1E01G144500, Tel1E01G145100, Tel1E01G145300 ... |
| Poaceae | Triticum dicoccoides | 21 | gene_TRIDC1AG009740, gene_TRIDC1AG009770 ... |
| Poaceae | Triticum aestivum | 51 | TraesCS1A02G070700.1.cds1, TraesCS1A02G070800.1.cds1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-34043 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21999 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.1995_chr01_- |