Basic Information
Locus ID:
Pt_Chr0402061
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 59351016 | 59353574 | - | Pt_Chr0402061 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 39,880.88 Da | 50.47 | 85.96 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 102 | 181 | 2.74745E-17 | - |
| Pfam | PF00651 | BTB/POZ domain | 107 | 194 | 4.7E-16 | IPR000210 |
| Pfam | PF07707 | BTB And C-terminal Kelch | 219 | 300 | 2.3E-4 | IPR011705 |
| SUPERFAMILY | SSF54695 | POZ domain | 107 | 195 | 2.2E-15 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 230 | 321 | 5.2E-5 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 96 | 229 | 2.2E-20 | IPR011333 |
| SMART | SM00225 | BTB_4 | 99 | 198 | 1.5E-9 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 94 | 166 | 13.404982 | IPR000210 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46260.1 | BTB/POZ/Kelch-associated protein. | 0 |
| RefSeq | XP_047046366.1 | BTB/POZ domain-containing protein At2g46260-like [Lolium rigidum] | 0 |
| O82343 | BTB/POZ domain-containing protein At2g46260 OS=Arabidopsis thaliana OX=3702 GN=At2g46260 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8R7QF46 | BTB domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0505050.1, HORVU.MOREX.r3.5HG0505080.1 |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_007033, gene-QYE76_007066, gene-QYE76_007067 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0402061, Pt_Chr0700949, Pt_Chr0700950, Pt_Chr0700951 |
| Poaceae | Thinopyrum elongatum | 3 | Tel5E01G574500, Tel5E01G575100, Tel5E01G575200 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC5AG052540, gene_TRIDC5AG052560 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS5A02G359000.1, TraesCS5A02G359400.1 ... |