Basic Information
Locus ID:
Pt_Chr0401931
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 54949105 | 54952434 | + | Pt_Chr0401931 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.80 | 27,267.01 Da | 55.02 | 54.94 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 152 | 222 | 3.7E-10 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 132 | 249 | 2.55E-14 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 146 | 237 | 3.4E-18 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 151 | 232 | 2.8E-5 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 150 | 236 | 11.264125 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 63 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76940.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_051197911.1 | nuclear speckle RNA-binding protein A-like isoform X2 [Lolium perenne] | 0 |
| Q8H0P8 | RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8R7V0S8 | RRM domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology