Basic Information
Locus ID:
Pt_Chr0401930
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
SET domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 54912763 | 54925316 | - | Pt_Chr0401930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 122,496.27 Da | 47.62 | 83.64 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10527 | SET_LSMT | 511 | 847 | 2.05218E-41 | - |
| CDD | cd05117 | STKc_CAMK | 30 | 288 | 3.01301E-126 | - |
| Pfam | PF00069 | Protein kinase domain | 31 | 289 | 9.2E-70 | IPR000719 |
| SUPERFAMILY | SSF82199 | SET domain | 518 | 851 | 1.14E-36 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 28 | 290 | 4.99E-87 | IPR011009 |
| Gene3D | G3DSA:3.90.1410.10 | set domain protein methyltransferase, domain 1 | 501 | 847 | 1.7E-43 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 118 | 306 | 3.7E-63 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 33 | 117 | 7.0E-24 | - |
| SMART | SM00220 | serkin_6 | 31 | 289 | 3.3E-99 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 31 | 289 | 50.095856 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 37 | 64 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 151 | 163 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 746 | 763 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1021 | 1040 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 746 | 767 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1011 | 1040 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G01920.2 | SET domain-containing protein. | 0 |
| RefSeq | XP_052158584.1 | uncharacterized protein LOC127776256 [Oryza glaberrima] | 0 |
| Q7XIM0 | Calcium-dependent protein kinase 17 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1CQL2 | Protein kinase domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_016229 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29302 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23271 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023096 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg49319 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg5826, Seu_jg6463 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000357 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11184, Sgl16583 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016397, gene:ENSEOMG00000035809 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0005520, CQ.Regalona.r1.2BG0024110 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30003380 |
| Apiaceae | Apium graveolens | 1 | Ag6G00145 |
| Arecaceae | Cocos nucifera | 2 | contig68481346G000010, scaffold051111G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721376 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.1729.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G00072 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G01920.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007294m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g00380.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g000800.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0643 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0657 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g01890 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0099s00013.v1.0, Dusal.0154s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g11620 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.953 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00032096 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G03396 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.468, BH06.145, CH06.138 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0506840, gene-QOZ80_6BG0458580 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0642740.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_027560 |
| Poaceae | Oryza coarctata | 2 | Oco11G001200, Oco12G001110 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g03676.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G019300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0401909, Pt_Chr0401930 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr11G024110 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G124600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG063800, gene_TRIDC7AG006070 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G432200.1, TraesCS7D02G052800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb269430_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40277, nbis-gene-40278 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29020 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.2357 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g07300 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.326 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10904 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3405 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10481 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.536 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013422 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9233 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6980 |
| Salicaceae | Populus euphratica | 2 | populus_peu27763, populus_peu27764 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645650 |
| Solanaceae | Solanum chilense | 1 | SOLCI002558400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008205 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1463 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2499 |
| Zosteraceae | Zostera marina | 1 | Zosma05g31960.v3.1 |