Basic Information
Locus ID:
Pt_Chr0401832
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
protein modification by small protein conjugation or removal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 52628474 | 52637241 | - | Pt_Chr0401832 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 87,980.05 Da | 40.66 | 87.49 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 431 | 528 | 1.23938E-15 | IPR002083 |
| CDD | cd00121 | MATH | 38 | 167 | 9.55583E-24 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 552 | 662 | 6.7E-25 | IPR000210 |
| Pfam | PF00917 | MATH domain | 58 | 167 | 0.011 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 193 | 304 | 1.9E-22 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 36 | 172 | 8.99E-26 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 431 | 528 | 8.01E-15 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 181 | 305 | 1.65E-28 | IPR011333 |
| SUPERFAMILY | SSF54695 | POZ domain | 535 | 664 | 8.05E-31 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 178 | 301 | 4.7E-33 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 732 | 797 | 2.6E-15 | - |
| Gene3D | G3DSA:1.25.40.420 | - | 305 | 375 | 9.6E-18 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 429 | 529 | 1.0E-12 | IPR008974 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 38 | 171 | 8.4E-23 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 531 | 684 | 3.9E-42 | IPR011333 |
| SMART | SM00225 | BTB_4 | 202 | 306 | 1.8E-23 | IPR000210 |
| SMART | SM00225 | BTB_4 | 561 | 664 | 1.7E-22 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 37 | 167 | 16.4021 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 561 | 629 | 17.810247 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 202 | 263 | 17.293198 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 405 | 534 | 10.23985 | IPR002083 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_047044113.1 | uncharacterized protein LOC124648376 [Lolium rigidum] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6UAT2 | BTB domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0401832 |
| Poaceae | Triticum aestivum | 1 | TraesCSU02G094600.1 |