Basic Information
Locus ID:
Pt_Chr0401800
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 51480482 | 51496036 | + | Pt_Chr0401800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.07 | 50,976.45 Da | 53.51 | 68.42 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 276 | 314 | 0.0087 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 320 | 358 | 5.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 363 | 399 | 0.025 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 204 | 445 | 1.02E-46 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 190 | 442 | 1.0E-63 | IPR015943 |
| SMART | SM00320 | WD40_4 | 402 | 441 | 480.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 317 | 358 | 7.8E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 190 | 228 | 50.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 274 | 314 | 1.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 232 | 270 | 0.072 | IPR001680 |
| SMART | SM00320 | WD40_4 | 361 | 399 | 5.9E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 324 | 360 | 9.54651 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 281 | 323 | 11.611251 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 281 | 317 | 8.781968 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 324 | 367 | 12.814306 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 367 | 408 | 9.338814 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 345 | 359 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 386 | 400 | 4.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 345 | 359 | 4.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 301 | 315 | 4.6E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_047087152.1 | uncharacterized protein LOC124698751 isoform X2 [Lolium rigidum] | 0 |
| Q54YD8 | Coatomer subunit beta' OS=Dictyostelium discoideum OX=44689 GN=copb2 PE=3 SV=1 | 0 | |
| TrEMBL | A0A453T9V3 | WD_REPEATS_REGION domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology