Basic Information
Locus ID:
Pt_Chr0401796
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
FFAT motif binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 51430381 | 51432232 | + | Pt_Chr0401796 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 26,769.01 Da | 42.23 | 68.05 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 125 | 162 | 1.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 80 | 118 | 1.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 8 | 211 | 6.2E-40 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 228 | 1.5E-53 | IPR015943 |
| SMART | SM00320 | WD40_4 | 78 | 118 | 5.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 121 | 162 | 2.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 177 | 216 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 36 | 74 | 0.14 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 85 | 127 | 14.318126 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 128 | 171 | 12.279615 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 128 | 164 | 9.493783 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 85 | 121 | 10.996502 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 149 | 163 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G52360.3 | - | 0 |
| RefSeq | XP_047087152.1 | uncharacterized protein LOC124698751 isoform X2 [Lolium rigidum] | 0 |
| Q9C827 | Coatomer subunit beta'-2 OS=Arabidopsis thaliana OX=3702 GN=At1g52360 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453T9V3 | WD_REPEATS_REGION domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology