Basic Information
Locus ID:
Pt_Chr0401778
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Cysteine-rich receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 50864492 | 50900888 | + | Pt_Chr0401778 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.48 | 214,791.73 Da | 47.20 | 84.08 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 668 | 958 | 6.50158E-38 | - |
| Pfam | PF00635 | MSP (Major sperm protein) domain | 1400 | 1493 | 6.9E-13 | IPR000535 |
| Pfam | PF00400 | WD domain, G-beta repeat | 760 | 796 | 0.1 | IPR001680 |
| Pfam | PF00069 | Protein kinase domain | 1176 | 1359 | 1.5E-34 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 32 | 263 | 5.2E-45 | IPR000719 |
| Pfam | PF00400 | WD domain, G-beta repeat | 847 | 883 | 8.6E-6 | IPR001680 |
| Pfam | PF00635 | MSP (Major sperm protein) domain | 342 | 435 | 2.2E-12 | IPR000535 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1179 | 1369 | 1.25E-44 | IPR011009 |
| SUPERFAMILY | SSF49354 | PapD-like | 334 | 462 | 7.59E-17 | IPR008962 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 16 | 308 | 5.12E-63 | IPR011009 |
| SUPERFAMILY | SSF49354 | PapD-like | 526 | 618 | 7.59E-7 | IPR008962 |
| SUPERFAMILY | SSF49354 | PapD-like | 1759 | 1841 | 6.28E-7 | IPR008962 |
| SUPERFAMILY | SSF49354 | PapD-like | 1392 | 1518 | 2.62E-18 | IPR008962 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 668 | 962 | 3.66E-42 | IPR036322 |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 1754 | 1886 | 1.2E-10 | IPR013783 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 132 | 327 | 2.5E-48 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 667 | 803 | 1.6E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 816 | 969 | 2.0E-28 | IPR015943 |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 524 | 648 | 3.4E-11 | IPR013783 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1166 | 1389 | 6.0E-49 | - |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 334 | 461 | 9.2E-24 | IPR013783 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 10 | 108 | 4.9E-17 | - |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 1392 | 1519 | 1.6E-24 | IPR013783 |
| SMART | SM00220 | serkin_6 | 31 | 316 | 7.3E-31 | IPR000719 |
| SMART | SM00220 | serkin_6 | 1123 | 1374 | 9.5E-11 | IPR000719 |
| SMART | SM00320 | WD40_4 | 758 | 798 | 4.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 712 | 751 | 0.31 | IPR001680 |
| SMART | SM00320 | WD40_4 | 650 | 694 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 886 | 924 | 7.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 842 | 883 | 1.8E-8 | IPR001680 |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 339 | 458 | 15.717758 | IPR000535 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1101 | 1369 | 22.237741 | IPR000719 |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 1397 | 1516 | 16.067463 | IPR000535 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 849 | 885 | 11.075592 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 765 | 796 | 8.703868 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 31 | 311 | 34.576725 | IPR000719 |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 1760 | 1885 | 8.898499 | IPR000535 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 849 | 892 | 14.084198 | IPR001680 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1231 | 1243 | - | IPR008271 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 870 | 884 | - | IPR019775 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 173 | 185 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 987 | 1006 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00960.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_044430725.1 | uncharacterized protein LOC123156650 isoform X1 [Triticum aestivum] | 0 |
| O23082 | Cysteine-rich receptor-like protein kinase 44 OS=Arabidopsis thaliana OX=3702 GN=CRK44 PE=3 SV=2 | 0 | |
| TrEMBL | A0A3B6STS7 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology