Basic Information
Locus ID:
Pt_Chr0401777
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
phospholipase A2 activator activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 50846768 | 50849856 | + | Pt_Chr0401777 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.10 | 29,992.62 Da | 42.48 | 77.75 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 80 | 118 | 8.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 167 | 203 | 9.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 124 | 162 | 3.7E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 7 | 248 | 2.11E-47 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 248 | 8.5E-63 | IPR015943 |
| SMART | SM00320 | WD40_4 | 165 | 203 | 8.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 78 | 118 | 1.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 121 | 162 | 7.3E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 36 | 74 | 0.0066 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 85 | 127 | 12.480124 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 171 | 203 | 9.271977 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 85 | 121 | 9.467419 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 128 | 164 | 9.388329 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 128 | 171 | 12.613797 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 149 | 163 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 190 | 204 | 5.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 105 | 119 | 5.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 149 | 163 | 5.2E-7 | IPR020472 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46290.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_047087152.1 | uncharacterized protein LOC124698751 isoform X2 [Lolium rigidum] | 0 |
| O35142 | Coatomer subunit beta' OS=Rattus norvegicus OX=10116 GN=Copb2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A453T9V3 | WD_REPEATS_REGION domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology