Basic Information
Locus ID:
Pt_Chr0401763
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
FFAT motif binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 50528281 | 50544711 | + | Pt_Chr0401763 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 99,169.56 Da | 42.27 | 92.32 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 32 | 296 | 4.0E-37 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 485 | 708 | 1.2E-41 | IPR000719 |
| Pfam | PF00635 | MSP (Major sperm protein) domain | 325 | 426 | 8.5E-20 | IPR000535 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 465 | 711 | 2.43E-59 | IPR011009 |
| SUPERFAMILY | SSF49354 | PapD-like | 317 | 446 | 3.4E-24 | IPR008962 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 17 | 305 | 1.35E-58 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 124 | 319 | 5.4E-42 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 577 | 747 | 1.3E-38 | - |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 320 | 445 | 1.4E-27 | IPR013783 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 454 | 555 | 5.2E-20 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 10 | 101 | 1.8E-19 | - |
| SMART | SM00220 | serkin_6 | 31 | 298 | 4.8E-13 | IPR000719 |
| SMART | SM00220 | serkin_6 | 484 | 780 | 2.4E-29 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 31 | 299 | 29.573288 | IPR000719 |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 323 | 443 | 20.351357 | IPR000535 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 484 | 830 | 33.120922 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 37 | 62 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 618 | 630 | - | IPR008271 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 165 | 177 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 490 | 513 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21410.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 29. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_037449553.1 | G2-specific protein kinase nimA-like [Triticum dicoccoides] | 0 |
| Q8S9L6 | Cysteine-rich receptor-like protein kinase 29 OS=Arabidopsis thaliana OX=3702 GN=CRK29 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6NIE8 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0401763 |
| Poaceae | Thinopyrum elongatum | 3 | Tel3E01G887300, Tel7E01G003400, Tel7E01G032900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2BG011520, gene_TRIDC6AG000550 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS2B02G100300.1, TraesCS4A02G476000.1 ... |