Basic Information
Locus ID:
Pt_Chr0401647
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 47485525 | 47494463 | + | Pt_Chr0401647 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.53 | 233,131.09 Da | 54.60 | 63.46 | -0.86 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:4.10.1000.10 | - | 1968 | 2028 | 2.6E-9 | - |
| Gene3D | G3DSA:4.10.1000.10 | - | 1912 | 1967 | 5.1E-13 | - |
| SMART | SM00356 | c3hfinal6 | 1940 | 1965 | 0.011 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 1885 | 1913 | 0.74 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 1994 | 2016 | 7.3 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 1967 | 1993 | 3.1E-4 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 1914 | 1938 | 28.0 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 1940 | 1966 | 11.628965 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 1967 | 1994 | 13.497396 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 1885 | 1914 | 12.351926 | IPR000571 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 436 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1588 | 1608 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 199 | 301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 603 | 630 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1422 | 1456 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 487 | 530 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 495 | 516 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1388 | 1407 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1363 | 1483 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2015 | 2036 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 820 | 844 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 603 | 669 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 436 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 638 | 664 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1464 | 1483 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 406 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21580.1 | Zinc finger C-x8-C-x5-C-x3-H type family protein. | 0 |
| RefSeq | XP_051203150.1 | uncharacterized protein LOC127316728 isoform X1 [Lolium perenne] | 0 |
| Q3ED78 | Zinc finger CCCH domain-containing protein 7 OS=Arabidopsis thaliana OX=3702 GN=At1g21570 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453T7V6 | Bromo domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12054 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1067 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah024158 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g010270 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2665, Sbi_jg28291 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg7144 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020163 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl01518, Sgl01520, Sgl06687, Sgl06689 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013104, gene:ENSEOMG00000035672 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1AG0013030, CQ.Regalona.r1.1AG0013050 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30044590 |
| Apiaceae | Apium graveolens | 1 | Ag7G02089 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G010880 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103722434 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.3474.V1.1, AsparagusV1_05.3232.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G10483 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G21580.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006523m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g19110.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g009250.2N, BniB04g036350.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2020 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g05540 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0173s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g26420 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1692 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.826 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023089 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G30858 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2398, BH06.2193, CH06.2413 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0545910, gene-QOZ80_6BG0499320 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0746460.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_036727 |
| Poaceae | Oryza coarctata | 2 | Oco11G013500, Oco12G013640 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g43120.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G201600 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0401630, Pt_Chr0401647, Pt_Chr0401649, Pt_Chr0401650 ... |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G030600, Chr05G008360, Chr10G018620, Chr10G018630 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G915200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG073590, gene_TRIDC7BG069960 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G525900.1, TraesCS7B02G443500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb387360_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-9951 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30863 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1183, evm.TU.LG14.514 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g16560 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1150 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18698 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-7256, nbisL1-mrna-9973, nbisL1-mrna-9974 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13137 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.401 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011906 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8898 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-24349 |
| Salicaceae | Populus euphratica | 4 | populus_peu14784, populus_peu14785, populus_peu14786 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627172 |
| Solanaceae | Solanum chilense | 1 | SOLCI003198300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017622 |
| Tamaricaceae | Reaumuria soongarica | 1 | MSTRG.20227_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2529 |
| Zosteraceae | Zostera marina | 1 | Zosma03g17850.v3.1 |