Basic Information
Locus ID:
Pt_Chr0401561
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Broad-Complex, Tramtrack and Bric a brac
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 45545466 | 45553753 | - | Pt_Chr0401561 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.02 | 35,195.61 Da | 43.73 | 88.15 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 24 | 157 | 3.58992E-20 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 188 | 232 | 3.5E-9 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 175 | 275 | 5.1E-16 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 23 | 161 | 8.18E-32 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 164 | 240 | 1.1E-16 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 21 | 160 | 4.7E-27 | IPR008974 |
| Gene3D | G3DSA:1.25.40.420 | - | 248 | 313 | 2.6E-18 | - |
| SMART | SM00225 | BTB_4 | 196 | 278 | 0.0071 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 196 | 225 | 11.212689 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 21 | 156 | 20.339804 | IPR002083 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_044961582.1 | BTB/POZ and MATH domain-containing protein 1-like [Hordeum vulgare subsp. vulgare] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8I6ZFA6 | Speckle-type POZ protein-like protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0744150.1.CDS1 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0401561 |
| Poaceae | Thinopyrum elongatum | 3 | Tel7E01G880100, Tel7E01G880200, Tel7E01G880300 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7BG067190 |
| Poaceae | Triticum aestivum | 4 | TraesCS7B02G422800.1, TraesCS7B02G423000.1.cds1 ... |