Basic Information
Locus ID:
Pt_Chr0401540
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 44984080 | 44990819 | + | Pt_Chr0401540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 51,181.28 Da | 67.04 | 76.39 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 380 | 419 | 3.2829E-20 | - |
| Pfam | PF04564 | U-box domain | 377 | 445 | 9.2E-18 | IPR003613 |
| Pfam | PF13414 | TPR repeat | 99 | 134 | 5.8E-7 | - |
| SUPERFAMILY | SSF48452 | TPR-like | 94 | 203 | 1.01E-27 | IPR011990 |
| SUPERFAMILY | SSF57850 | RING/U-box | 371 | 446 | 6.43E-26 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 354 | 446 | 2.7E-26 | IPR013083 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 90 | 204 | 5.4E-26 | IPR011990 |
| SMART | SM00028 | tpr_5 | 126 | 159 | 0.19 | IPR019734 |
| SMART | SM00028 | tpr_5 | 160 | 193 | 6.4 | IPR019734 |
| SMART | SM00504 | Ubox_2 | 379 | 441 | 9.8E-25 | IPR003613 |
| SMART | SM00028 | tpr_5 | 92 | 125 | 0.038 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 92 | 125 | 9.2929 | IPR019734 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 375 | 446 | 32.951996 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 82 | - | - |
| Coils | Coil | Coil | 253 | 321 | - | - |
| Coils | Coil | Coil | 64 | 84 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62740.1 | stress-inducible protein, putative. | 0 |
| RefSeq | XP_037456933.1 | U-box domain-containing protein 70-like [Triticum dicoccoides] | 0 |
| Q5WA76 | U-box domain-containing protein 70 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB70 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453QTP5 | TPR_REGION domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH06.358, BH06.474, CH06.471 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0510180, gene-QOZ80_6AG0512070 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.7HG0654940.1, HORVU.MOREX.r3.7HG0655040.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_028463, gene-QYE76_028467 |
| Poaceae | Oryza coarctata | 2 | Oco11G002860, Oco12G002920 |
| Poaceae | Oryza sativa | 4 | LOC_Os06g06450.1, LOC_Os06g06470.1, LOC_Os06g06490.1 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G053600 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0100581, Pt_Chr0401511, Pt_Chr0401540, Pt_Chr0402087 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr11G022250 |
| Poaceae | Thinopyrum elongatum | 5 | Tel6E01G117100, Tel6E01G538000, Tel7E01G244100 ... |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC7AG014340, gene_TRIDC7AG014380 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS7A02G122200.2, TraesCS7A02G122600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb257390_P002, Zm00001eb375820_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-34785 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31406 |