Basic Information
Locus ID:
Pt_Chr0401511
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 44012582 | 44018663 | + | Pt_Chr0401511 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.61 | 83,386.45 Da | 58.30 | 81.03 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 394 | 641 | 2.8E-37 | IPR001245 |
| Pfam | PF04564 | U-box domain | 667 | 727 | 6.5E-13 | IPR003613 |
| Pfam | PF14559 | Tetratricopeptide repeat | 69 | 111 | 1.6E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 667 | 729 | 5.03E-18 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 375 | 641 | 4.51E-55 | IPR011009 |
| SUPERFAMILY | SSF48452 | TPR-like | 62 | 171 | 1.08E-27 | IPR011990 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 463 | 664 | 4.4E-40 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 361 | 462 | 1.1E-22 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 36 | 181 | 1.1E-25 | IPR011990 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 665 | 730 | 2.0E-19 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 666 | 722 | 2.2E-13 | IPR003613 |
| SMART | SM00028 | tpr_5 | 59 | 92 | 0.92 | IPR019734 |
| SMART | SM00028 | tpr_5 | 93 | 126 | 0.19 | IPR019734 |
| SMART | SM00028 | tpr_5 | 127 | 160 | 6.4 | IPR019734 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 666 | 729 | 17.68432 | IPR003613 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 59 | 92 | 8.9094 | IPR019734 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 390 | 653 | 27.49559 | IPR000719 |
| ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 508 | 520 | - | IPR008266 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 49 | - | - |
| Coils | Coil | Coil | 243 | 369 | - | - |
| Coils | Coil | Coil | 201 | 221 | - | - |
| Coils | Coil | Coil | 37 | 57 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_048539227.1 | U-box domain-containing protein 70-like [Triticum urartu] | 0 |
| Q5WA76 | U-box domain-containing protein 70 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB70 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6RDP5 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH06.358, BH06.474, CH06.471 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0510180, gene-QOZ80_6AG0512070 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.7HG0654940.1, HORVU.MOREX.r3.7HG0655040.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_028463, gene-QYE76_028467 |
| Poaceae | Oryza coarctata | 2 | Oco11G002860, Oco12G002920 |
| Poaceae | Oryza sativa | 4 | LOC_Os06g06450.1, LOC_Os06g06470.1, LOC_Os06g06490.1 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G053600 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0100581, Pt_Chr0401511, Pt_Chr0401540, Pt_Chr0402087 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr11G022250 |
| Poaceae | Thinopyrum elongatum | 5 | Tel6E01G117100, Tel6E01G538000, Tel7E01G244100 ... |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC7AG014340, gene_TRIDC7AG014380 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS7A02G122200.2, TraesCS7A02G122600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb257390_P002, Zm00001eb375820_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-34785 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31406 |