Basic Information
Locus ID:
Pt_Chr0401476
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 43311643 | 43322417 | - | Pt_Chr0401476 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 174,182.80 Da | 50.80 | 85.70 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF11443 | Domain of unknown function (DUF2828) | 1004 | 1524 | 1.6E-199 | IPR011205 |
| Pfam | PF00940 | DNA-dependent RNA polymerase | 585 | 952 | 3.0E-123 | IPR002092 |
| Pfam | PF14700 | DNA-directed RNA polymerase N-terminal | 127 | 462 | 2.3E-69 | IPR029262 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 118 | 965 | 7.11E-230 | IPR043502 |
| SUPERFAMILY | SSF53300 | vWA-like | 1349 | 1476 | 2.27E-5 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 1343 | 1521 | 1.1E-10 | IPR036465 |
| Gene3D | G3DSA:1.10.287.260 | - | 463 | 545 | 9.4E-10 | IPR024075 |
| Gene3D | G3DSA:1.10.150.20 | - | 682 | 884 | 9.9E-58 | - |
| Gene3D | G3DSA:3.30.70.370 | - | 555 | 617 | 1.6E-6 | - |
| Gene3D | G3DSA:1.10.1320.10 | - | 101 | 461 | 1.5E-65 | IPR037159 |
| SMART | SM01311 | RPOL_N_2 | 126 | 462 | 1.0E-107 | IPR029262 |
| ProSitePatterns | PS00900 | Bacteriophage-type RNA polymerase family active site signature 1. | 661 | 672 | - | IPR002092 |
| ProSitePatterns | PS00489 | Bacteriophage-type RNA polymerase family active site signature 2. | 734 | 748 | - | IPR002092 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 288 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 269 | 288 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 983 | 1008 | - | - |
| Coils | Coil | Coil | 129 | 149 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24120.1 | DNA/RNA polymerases superfamily protein. | 0 |
| RefSeq | XP_051204605.1 | DNA-directed RNA polymerase 3B, chloroplastic-like [Lolium perenne] | 0 |
| P69243 | DNA-directed RNA polymerase 3A, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPOT3-SYL PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B6RRH2 | DNA-directed RNA polymerase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology