Basic Information
Locus ID:
Pt_Chr0401473
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 43237016 | 43247774 | - | Pt_Chr0401473 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.83 | 175,567.05 Da | 50.16 | 84.17 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF11443 | Domain of unknown function (DUF2828) | 1016 | 1536 | 1.6E-199 | IPR011205 |
| Pfam | PF14700 | DNA-directed RNA polymerase N-terminal | 127 | 462 | 2.4E-69 | IPR029262 |
| Pfam | PF00940 | DNA-dependent RNA polymerase | 585 | 964 | 4.9E-146 | IPR002092 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 118 | 977 | 4.89E-252 | IPR043502 |
| SUPERFAMILY | SSF53300 | vWA-like | 1361 | 1488 | 2.27E-5 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 1355 | 1533 | 1.1E-10 | IPR036465 |
| Gene3D | G3DSA:1.10.287.260 | - | 463 | 545 | 9.5E-10 | IPR024075 |
| Gene3D | G3DSA:1.10.287.280 | - | 585 | 663 | 6.1E-25 | - |
| Gene3D | G3DSA:1.10.150.20 | - | 694 | 896 | 1.0E-57 | - |
| Gene3D | G3DSA:1.10.1320.10 | - | 102 | 461 | 1.3E-65 | IPR037159 |
| SMART | SM01311 | RPOL_N_2 | 126 | 462 | 1.0E-107 | IPR029262 |
| ProSitePatterns | PS00900 | Bacteriophage-type RNA polymerase family active site signature 1. | 673 | 684 | - | IPR002092 |
| ProSitePatterns | PS00489 | Bacteriophage-type RNA polymerase family active site signature 2. | 746 | 760 | - | IPR002092 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 995 | 1020 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 269 | 288 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 288 | - | - |
| Coils | Coil | Coil | 129 | 149 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24120.1 | DNA/RNA polymerases superfamily protein. | 0 |
| RefSeq | XP_051204605.1 | DNA-directed RNA polymerase 3B, chloroplastic-like [Lolium perenne] | 0 |
| P69243 | DNA-directed RNA polymerase 3A, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPOT3-SYL PE=3 SV=1 | 0 | |
| TrEMBL | I1GVM2 | DNA-directed RNA polymerase OS=Brachypodium distachyon OX=15368 GN=100839892 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology