Basic Information
Locus ID:
Pt_Chr0401407
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
PPR repeat family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 41166771 | 41190086 | - | Pt_Chr0401407 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.03 | 253,613.95 Da | 43.53 | 75.65 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 380 | 418 | 0.057 | IPR011659 |
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 726 | 745 | 0.0072 | IPR011659 |
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 1744 | 1778 | 0.098 | IPR011659 |
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 2104 | 2118 | 0.014 | IPR011659 |
| Pfam | PF01535 | PPR repeat | 1405 | 1433 | 0.01 | IPR002885 |
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 2040 | 2072 | 8.2E-4 | IPR011659 |
| Pfam | PF01535 | PPR repeat | 45 | 71 | 2.2E-6 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 1295 | 1323 | 1.8E-5 | IPR002885 |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 1956 | 2181 | 3.65E-24 | - |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 345 | 800 | 7.65E-32 | - |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 1714 | 2026 | 4.32E-18 | - |
| Gene3D | G3DSA:2.120.10.30 | - | 1712 | 1933 | 4.2E-12 | IPR011042 |
| Gene3D | G3DSA:2.120.10.30 | - | 337 | 573 | 3.0E-12 | IPR011042 |
| Gene3D | G3DSA:2.120.10.30 | - | 2003 | 2183 | 2.8E-26 | IPR011042 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1206 | 1382 | 1.0E-15 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1389 | 1566 | 2.5E-8 | IPR011990 |
| Gene3D | G3DSA:2.120.10.30 | - | 648 | 859 | 2.3E-17 | IPR011042 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 2 | 163 | 1.3E-17 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1295 | 1324 | 5.3E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 45 | 71 | 8.4E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1405 | 1437 | 0.0014 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 40 | 74 | 9.799459 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1293 | 1327 | 10.698286 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21680.1 | DPP6 N-terminal domain-like protein. | 0 |
| RefSeq | XP_051181474.1 | uncharacterized protein LOC127295549 [Lolium perenne] | 0 |
| Q9MA95 | Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E82 PE=3 SV=2 | 0 | |
| TrEMBL | A0A6G1DQ01 | Pentatricopeptide repeat-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_032830 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology