HalophFGD

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Basic Information
Locus ID: Pt_Chr0401399
Species & Taxonomic ID: Puccinellia tenuiflora & 240906
Genome Assembly: GCA_012064385.1
Description: A Receptor for Ubiquitination Targets
Maps and Mapping Data
Chromosome Start End Strand ID
Chr04 40769428 40770513 + Pt_Chr0401399
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.87 39,538.54 Da 34.64 103.32 0.13
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF08268 F-box associated domain 202 286 2.6E-4 IPR013187
Pfam PF00646 F-box domain 30 66 3.9E-10 IPR001810
SUPERFAMILY SSF81383 F-box domain 29 74 5.23E-14 IPR036047
SUPERFAMILY SSF50965 Galactose oxidase, central domain 52 328 1.18E-8 IPR011043
Gene3D G3DSA:1.20.1280.50 - 29 66 4.8E-10 -
SMART SM00256 fbox_2 30 70 9.0E-10 IPR001810
TIGRFAM TIGR01640 F_box_assoc_1: F-box protein interaction domain 147 301 3.5E-14 IPR017451
ProSiteProfiles PS50181 F-box domain profile. 24 70 9.232525 IPR001810
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT5G10340.1 F-box family protein. 0
RefSeq XP_051201538.1 putative F-box protein At3g52320 [Lolium perenne] 0
Swiss-Prot Q3ECH0 F-box protein At1g67130 OS=Arabidopsis thaliana OX=3702 GN=At1g67130 PE=2 SV=3 0
TrEMBL A0A3B6SN33 F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Anacardiaceae Pistacia vera 1 pistato.v30291420
Arecaceae Phoenix dactylifera 1 gene-LOC103701671
Brassicaceae Arabidopsis thaliana 1 AT2G41473.1
Plantaginaceae Plantago ovata 2 Pov_00037827, Pov_00038433
Poaceae Echinochloa crus-galli 48 AH01.2189, AH01.2195, AH03.3555, AH03.520, AH03.521 ...
AH03.534, AH03.621, AH03.771, AH03.772, AH03.774, AH03.778, AH04.2085, AH04.865, AH06.2538, AH07.2230, BH01.2859, BH03.614, BH03.641, BH03.687, BH03.899, BH03.903, BH04.831, BH04.832, BH04.833, BH05.3670, BH05.609, BH06.2338, BH06.2339, BH06.2340, BH07.2292, CH02.2815, CH03.1011, CH03.1012, CH03.1013, CH03.1016, CH03.4058, CH03.699, CH03.706, CH03.710, CH03.719, CH04.2492, CH04.839, CH05.708, CH06.2562, CH06.2563, CH06.2564, CH07.107, CH07.2367
Poaceae Eleusine coracana subsp. coracana 28 gene-QOZ80_2AG0108440, gene-QOZ80_2AG0132200 ...
gene-QOZ80_2AG0132210, gene-QOZ80_2BG0162070, gene-QOZ80_2BG0162080, gene-QOZ80_2BG0187660, gene-QOZ80_5AG0387550, gene-QOZ80_5AG0388340, gene-QOZ80_5AG0398950, gene-QOZ80_5BG0447660, gene-QOZ80_6AG0547090, gene-QOZ80_7AG0559540, gene-QOZ80_7AG0559690, gene-QOZ80_7AG0559710, gene-QOZ80_7AG0559930, gene-QOZ80_7AG0562450, gene-QOZ80_7AG0562470, gene-QOZ80_7AG0562480, gene-QOZ80_7BG0590880, gene-QOZ80_7BG0590920, gene-QOZ80_7BG0590940, gene-QOZ80_7BG0590980, gene-QOZ80_7BG0591120, gene-QOZ80_7BG0591160, gene-QOZ80_7BG0591210, gene-QOZ80_8AG0629740, gene-QOZ80_8BG0658620, gene-QOZ80_8BG0658660
Poaceae Hordeum vulgare 9 HORVU.MOREX.r3.3HG0234450.1, HORVU.MOREX.r3.3HG0246530.1 ...
HORVU.MOREX.r3.6HG0548950.1.CDS1, HORVU.MOREX.r3.6HG0548980.1.CDS1, HORVU.MOREX.r3.6HG0560200.1.CDS1, HORVU.MOREX.r3.6HG0567110.1, HORVU.MOREX.r3.6HG0567120.1.CDS1, HORVU.MOREX.r3.7HG0739630.1.CDS1, HORVU.MOREX.r3.7HG0739810.1.CDS1
Poaceae Lolium multiflorum 71 gene-QYE76_003164, gene-QYE76_003165, gene-QYE76_003228 ...
gene-QYE76_003229, gene-QYE76_005940, gene-QYE76_006449, gene-QYE76_007425, gene-QYE76_007426, gene-QYE76_007427, gene-QYE76_009917, gene-QYE76_009927, gene-QYE76_016247, gene-QYE76_018810, gene-QYE76_019790, gene-QYE76_019793, gene-QYE76_019795, gene-QYE76_019800, gene-QYE76_019809, gene-QYE76_019946, gene-QYE76_020019, gene-QYE76_024117, gene-QYE76_024384, gene-QYE76_026658, gene-QYE76_026823, gene-QYE76_030422, gene-QYE76_034567, gene-QYE76_036437, gene-QYE76_036439, gene-QYE76_036444, gene-QYE76_036446, gene-QYE76_036448, gene-QYE76_036449, gene-QYE76_036450, gene-QYE76_036452, gene-QYE76_036457, gene-QYE76_036458, gene-QYE76_037638, gene-QYE76_042937, gene-QYE76_046918, gene-QYE76_047312, gene-QYE76_048592, gene-QYE76_048596, gene-QYE76_049145, gene-QYE76_049286, gene-QYE76_049621, gene-QYE76_055065, gene-QYE76_055931, gene-QYE76_056377, gene-QYE76_057543, gene-QYE76_057544, gene-QYE76_059520, gene-QYE76_059840, gene-QYE76_060017, gene-QYE76_060018, gene-QYE76_060020, gene-QYE76_060365, gene-QYE76_060370, gene-QYE76_062142, gene-QYE76_062143, gene-QYE76_062144, gene-QYE76_062145, gene-QYE76_062171, gene-QYE76_062172, gene-QYE76_062173, gene-QYE76_062174, gene-QYE76_064526, gene-QYE76_067456, gene-QYE76_067457, gene-QYE76_067460, gene-QYE76_067461, gene-QYE76_069926
Poaceae Oryza coarctata 16 Oco01G012120, Oco13G003280, Oco13G003300, Oco13G003340 ...
Oco13G004400, Oco14G003120, Oco14G003130, Oco14G003580, Oco14G003600, Oco14G003610, Oco14G003630, Oco14G003650, Oco14G003680, Oco14G003720, Oco14G005030, Oco23G005920
Poaceae Oryza sativa 12 LOC_Os05g49530.1, LOC_Os07g08570.1, LOC_Os07g08850.1 ...
LOC_Os07g09710.1, LOC_Os07g09750.1, LOC_Os07g09814.2, LOC_Os07g09870.1, LOC_Os07g09880.1, LOC_Os07g09950.1, LOC_Os07g10710.1, LOC_Os07g13870.1, LOC_Os07g13890.1
Poaceae Paspalum vaginatum 14 gene-BS78_01G479600, gene-BS78_02G068700 ...
gene-BS78_02G068800, gene-BS78_02G069400, gene-BS78_02G069500, gene-BS78_02G069600, gene-BS78_02G071200, gene-BS78_02G115600, gene-BS78_02G115700, gene-BS78_03G143400, gene-BS78_04G146000, gene-BS78_05G105300, gene-BS78_05G105400, gene-BS78_10G214800
Poaceae Puccinellia tenuiflora 20 Pt_Chr0103507, Pt_Chr0103508, Pt_Chr0103509, Pt_Chr0103511 ...
Pt_Chr0202703, Pt_Chr0207151, Pt_Chr0303772, Pt_Chr0303775, Pt_Chr0303796, Pt_Chr0303804, Pt_Chr0400012, Pt_Chr0401397, Pt_Chr0401398, Pt_Chr0401399, Pt_Chr0401403, Pt_Chr0401413, Pt_Chr0401414, Pt_Chr0401416, Pt_Chr0401418, Pt_Chr0600836
Poaceae Sporobolus alterniflorus 16 Chr06G011030, Chr15G012580, Chr20G006450, Chr24G003140 ...
Chr24G003150, Chr24G003180, Chr24G003190, Chr24G003460, Chr24G004840, Chr26G001660, Chr28G002610, Chr28G002620, Chr28G002720, Chr28G004160, Chr28G005940, Chr29G006070
Poaceae Thinopyrum elongatum 14 Tel3E01G139700, Tel3E01G139900, Tel5E01G518300 ...
Tel5E01G519000, Tel5E01G519200, Tel5E01G519300, Tel5E01G828800, Tel6E01G160400, Tel6E01G163000, Tel6E01G273200, Tel6E01G295000, Tel6E01G295100, Tel7E01G754500, Tel7E01G842700
Poaceae Triticum dicoccoides 9 gene_TRIDC2AG077760, gene_TRIDC2BG075100 ...
gene_TRIDC3BG012920, gene_TRIDC3BG015590, gene_TRIDC3BG024110, gene_TRIDC5BG052180, gene_TRIDC6AG019220, gene_TRIDC6BG012510, gene_TRIDC6BG025200
Poaceae Triticum aestivum 49 TraesCS2B02G520400.1, TraesCS2D02G060700.1.cds1 ...
TraesCS2D02G492500.1, TraesCS2D02G520600.1.cds1, TraesCS2D02G556400.1.cds1, TraesCS3A02G096100.1.cds1, TraesCS3A02G135000.1, TraesCS3B02G091600.1.cds1, TraesCS3B02G111900.1.cds1, TraesCS3B02G168800.1, TraesCS3D02G079500.1.cds1, TraesCS3D02G096600.1.cds1, TraesCS3D02G151000.1, TraesCS5A02G326000.1.cds1, TraesCS5A02G326400.1.cds1, TraesCS5A02G326500.1.cds1, TraesCS5A02G326600.1.cds1, TraesCS5B02G326700.1.cds1, TraesCS5B02G326800.1.cds1, TraesCS5B02G326900.1.cds1, TraesCS5B02G327000.1.cds1, TraesCS5B02G327100.1.cds1, TraesCS5B02G534500.1.cds1, TraesCS5D02G332500.1.cds1, TraesCS5D02G332600.1.cds1, TraesCS5D02G332700.1.cds1, TraesCS5D02G332800.1.cds1, TraesCS5D02G332900.1.cds1, TraesCS5D02G333000.1.cds1, TraesCS6A02G066600.1.cds1, TraesCS6A02G140600.1, TraesCS6A02G140700.1, TraesCS6B02G089800.1.cds1, TraesCS6D02G065800.1.cds1, TraesCS6D02G066000.1.cds1, TraesCS6D02G128300.1, TraesCS6D02G130000.1, TraesCS6D02G130100.1, TraesCS7A02G492200.1, TraesCS7A02G493200.1.cds1, TraesCS7B02G397900.1.cds1, TraesCS7B02G398200.1.cds1, TraesCS7B02G399000.1.cds1, TraesCS7B02G399100.1.cds1, TraesCS7B02G399200.1.cds1, TraesCS7D02G478200.1.cds1, TraesCSU02G049800.1.cds1, TraesCSU02G076800.1.cds1, TraesCSU02G117500.1.cds1
Poaceae Zea mays 3 Zm00001eb325430_P001, Zm00001eb407470_P001 ...
Zm00001eb407480_P003
Poaceae Zoysia japonica 9 nbis-gene-26706, nbis-gene-26708, nbis-gene-26714 ...
nbis-gene-35574, nbis-gene-35576, nbis-gene-35580, nbis-gene-38811, nbis-gene-52763, nbis-gene-55664
Poaceae Zoysia macrostachya 8 Zma_g4874, Zma_g4879, Zma_g4880, Zma_g6151, Zma_g6152 ...
Zma_g6153, Zma_g6154, Zma_g6252
Solanaceae Lycium barbarum 2 gene-LOC132610451, gene-LOC132613453
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.