Basic Information
Locus ID:
Pt_Chr0401393
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Short Name:
UBC22
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 40549268 | 40553267 | - | Pt_Chr0401393 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.36 | 27,118.90 Da | 42.37 | 85.40 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 12 | 151 | 1.27256E-57 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 15 | 150 | 3.9E-38 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 5 | 157 | 3.62E-49 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 3 | 179 | 4.2E-49 | IPR016135 |
| SMART | SM00212 | ubc_7 | 13 | 156 | 8.7E-49 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 10 | 156 | 43.152351 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 83 | 98 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 248 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 177 | 199 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05080.1 | ubiquitin-conjugating enzyme 22. | 0 |
| RefSeq | XP_044439181.1 | ubiquitin-conjugating enzyme E2 22-like [Triticum aestivum] | 0 |
| Q9FF66 | Ubiquitin-conjugating enzyme E2 22 OS=Arabidopsis thaliana OX=3702 GN=UBC22 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6TQV6 | UBC core domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg15770, jg4164 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19137 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah022323, Ah030887 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g064240, BVRB_5g120780 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4371, Sbi_jg49453 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5789 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000328, GOSA_00012896 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl02407, Sgl07557, Sgl11227, Sgl16622 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012726, gene:ENSEOMG00000029980 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0023950, CQ.Regalona.r1.3BG0024860 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30201160 |
| Apiaceae | Apium graveolens | 3 | Ag10G02178, Ag2G01567, AgUnG00879 |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G007940, COCNU_11G009750, COCNU_11G013250 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103701486, gene-LOC103707041, gene-LOC120103744 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.634.V1.1, AsparagusV1_05.2393.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G22280, Ftri6G02225 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G05080.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014464m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g37750.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g055580.2N, BniB08g002030.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1465 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1498 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g17870, gene.Cymno04g12240 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0019s00029.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g10250 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8757 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1577 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000106 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G16835, Lb7G33712 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.2548, AH06.2549, BH06.2352, BH06.2353, CH06.2570 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0547160, gene-QOZ80_6AG0547170 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.6HG0570430.1, HORVU.MOREX.r3.7HG0739540.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_020863, gene-QYE76_020904, gene-QYE76_036431 |
| Poaceae | Oryza coarctata | 2 | Oco11G014470, Oco12G014620 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g45000.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_10G216100, gene-BS78_10G216200 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0202368, Pt_Chr0401393, Pt_Chr0401394, Pt_Chr0401410 ... |
| Poaceae | Sporobolus alterniflorus | 7 | Chr02G031400, Chr05G009160, Chr05G009170, Chr10G019600 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G314900, Tel7E01G833700 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC6AG021410, gene_TRIDC6BG027180 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS6A02G153500.1, TraesCS6B02G181200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb274710_P001, Zm00001eb389230_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40476, nbis-gene-9837 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30942, Zma_g33199 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.2043, evm.TU.LG15.1097 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g28430, gene.Posoc02g06640 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.1563, evm.TU.Scaffold_8_RagTag.245 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-10069, nbisL1-mrna-19909 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19373, nbisL1-mrna-8521 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-13495, nbisL1-mrna-13496, nbisL1-mrna-17872 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.138, evm.TU.utg000018l.834 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00002876, Maker00011823 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13167, nbisL1-mrna-3172 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11360, nbisL1-mrna-12253 |
| Salicaceae | Populus euphratica | 2 | populus_peu10740, populus_peu26374 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607308 |
| Solanaceae | Solanum chilense | 1 | SOLCI000034300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002230 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12388 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G2038 |
| Zosteraceae | Zostera marina | 3 | Zosma01g33440.v3.1, Zosma01g42840.v3.1, Zosma02g15260.v3.1 |