Basic Information
Locus ID:
Pt_Chr0401391
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
PPR repeat family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 40420723 | 40460247 | + | Pt_Chr0401391 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 294,352.41 Da | 45.88 | 75.48 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 578 | 616 | 0.068 | IPR011659 |
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 2334 | 2348 | 0.016 | IPR011659 |
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 1974 | 2008 | 0.12 | IPR011659 |
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 934 | 953 | 0.0084 | IPR011659 |
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 2270 | 2302 | 9.7E-4 | IPR011659 |
| Pfam | PF01535 | PPR repeat | 1503 | 1531 | 2.2E-5 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 1624 | 1652 | 0.012 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 244 | 270 | 2.6E-6 | IPR002885 |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 1944 | 2256 | 5.1E-18 | - |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 2186 | 2411 | 3.22E-24 | - |
| SUPERFAMILY | SSF69304 | Tricorn protease N-terminal domain | 542 | 718 | 9.94E-13 | - |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 654 | 1007 | 1.92E-28 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1550 | 1770 | 6.6E-15 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 180 | 360 | 2.8E-13 | IPR011990 |
| Gene3D | G3DSA:2.120.10.30 | - | 804 | 1067 | 2.4E-28 | IPR011042 |
| Gene3D | G3DSA:2.120.10.30 | - | 2207 | 2415 | 7.3E-28 | IPR011042 |
| Gene3D | G3DSA:2.120.10.30 | - | 535 | 766 | 3.7E-12 | IPR011042 |
| Gene3D | G3DSA:2.120.10.30 | - | 1941 | 2162 | 5.0E-12 | IPR011042 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1424 | 1549 | 5.8E-12 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 244 | 270 | 9.9E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1503 | 1532 | 5.8E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1624 | 1656 | 0.0017 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1501 | 1535 | 10.698286 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 239 | 273 | 9.799459 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2638 | 2657 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21680.1 | DPP6 N-terminal domain-like protein. | 0 |
| RefSeq | XP_051181474.1 | uncharacterized protein LOC127295549 [Lolium perenne] | 0 |
| Q9MA95 | Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E82 PE=3 SV=2 | 0 | |
| TrEMBL | A0A6G1DQ01 | Pentatricopeptide repeat-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_032830 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology