Basic Information
Locus ID:
Pt_Chr0401304
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Scavenger mRNA decapping enzyme C-term binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 37951560 | 37954218 | - | Pt_Chr0401304 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.55 | 18,885.52 Da | 41.34 | 96.07 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01276 | PKCI_related | 66 | 170 | 2.84241E-53 | - |
| Pfam | PF01230 | HIT domain | 75 | 172 | 5.3E-29 | IPR001310 |
| SUPERFAMILY | SSF54197 | HIT-like | 65 | 177 | 1.55E-32 | IPR036265 |
| Gene3D | G3DSA:3.30.428.10 | - | 46 | 178 | 4.8E-40 | IPR036265 |
| ProSiteProfiles | PS51084 | HIT domain profile. | 68 | 178 | 15.104891 | IPR011146 |
| ProSitePatterns | PS00892 | HIT domain signature. | 151 | 169 | - | IPR019808 |
| PRINTS | PR00332 | Histidine triad family signature | 89 | 107 | 1.8E-19 | IPR001310 |
| PRINTS | PR00332 | Histidine triad family signature | 68 | 84 | 1.8E-19 | IPR001310 |
| PRINTS | PR00332 | Histidine triad family signature | 158 | 168 | 1.8E-19 | IPR001310 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31160.1 | HISTIDINE TRIAD NUCLEOTIDE-BINDING 2. Encodes a member of the histidine triad nucleotide-binding family of proteins, but its activity has not been determined. | 0 |
| RefSeq | XP_044960752.1 | 14 kDa zinc-binding protein-like [Hordeum vulgare subsp. vulgare] | 0 |
| P42856 | 14 kDa zinc-binding protein OS=Zea mays OX=4577 GN=ZBP14 PE=1 SV=1 | 0 | |
| TrEMBL | F2DVF5 | Predicted protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg15755, jg25080, jg33181 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19146 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah022364, Ah024752 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g064520, BVRB_3g064530 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg59021, Sbi_jg59022, Sbi_jg63609, Sbi_jg63610 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg23281, Seu_jg23282 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00012869, GOSA_00012871 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl02438, Sgl02441, Sgl07591, Sgl07594 |
| Amaranthaceae | Chenopodium album | 8 | gene:ENSEOMG00000011603, gene:ENSEOMG00000013111 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.3AG0024310, CQ.Regalona.r1.3AG0024320 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30189520, pistato.v30258940 |
| Apiaceae | Apium graveolens | 3 | Ag10G02185, Ag4G01436, Ag9G02501 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G005640, COCNU_16G000260 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103709060, gene-LOC103713176, gene-LOC120107939 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.1277.V1.1, AsparagusV1_08.2569.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G13691, Ftri17G14338 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G31160.1, AT3G56490.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006296m.g.v1.0, Thhalv10009998m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g26980.v2.2, Sp5g06100.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB03g034800.2N, BniB06g056350.2N, BniB06g064380.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G1425, Ceq08G1521 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G1587, Cgl08G1553 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g17800, gene.Cymno17g03560 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.4140s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate05g21230, gene.Thate07g10060 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.2680, evm.TU.LG12.404 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00000292, Pov_00038642 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G17704 |
| Poaceae | Echinochloa crus-galli | 5 | AH01.3807, AH06.2610, BH01.4147, BH06.2417, CH01.4423 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1BG0087460, gene-QOZ80_6AG0547630 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0380240.1, HORVU.MOREX.r3.7HG0737490.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_036253, gene-QYE76_068289 |
| Poaceae | Oryza coarctata | 6 | Oco01G022950, Oco02G023710, Oco05G012260, Oco06G014180 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g59750.1, LOC_Os03g20630.1, LOC_Os06g45660.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G369800, gene-BS78_03G313200 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0103205, Pt_Chr0106056, Pt_Chr0107853, Pt_Chr0401304 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G006670, Chr04G010120, Chr05G026710, Chr07G001690 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G318400, Tel7E01G803500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG017810, gene_TRIDC4BG034820 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G128600.1, TraesCS4B02G176200.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb015330_P001, Zm00001eb150020_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-31397, nbis-gene-3453, nbis-gene-9796 |
| Poaceae | Zoysia macrostachya | 4 | Zma_g11386, Zma_g1314, Zma_g30968, Zma_g3731 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG07.2021, evm.TU.LG07.2022, evm.TU.LG13.1626 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g06440, gene.Posoc10g08960 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.251 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8518 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17875 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000018l.832, evm.TU.utg000025l.175 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003099 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-3175, nbisL1-mrna-8585 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11354, nbisL1-mrna-23042 |
| Salicaceae | Populus euphratica | 2 | populus_peu26381, populus_peu29099 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132607293, gene-LOC132623815 |
| Solanaceae | Solanum chilense | 1 | SOLCI001641400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107011241, gene-LOC107031988 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.10448_chr07_-, STRG.20960_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0532 |
| Zosteraceae | Zostera marina | 2 | Zosma02g18590.v3.1, Zosma05g20140.v3.1 |